you have a few things mixed up. first, phpMyAdmin is an web based application for administering your MySQL database server. SQLiteManager is a web based application for administering your SQLite database server. They are totally different database servers. So, when you use phpMyAdmin to create a database for your MySQL server, it will not show up in SQLiteManager because SQLiteManager just deals with SQLite databases, not MySQL databases.
to learn how to correctly set users and permissions for you mysql users and databases, check out this post:
http://forum.wampserver.com/read.php?f=2&i=6816&t=6816MySQL Info:http://www.mysql.comSQLite Info:http://php.net/manual/en/ref.sqlite.php