EDIT: Problem is NOT solved. The error messages disappeared but once I logged out, I could not log back in until I reversed the changes below.
So, back to my original question: Do I need to re-initialize MySQL. Is this correct? If so, how do I do that?
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Problem solved.
Rather than changing my.ini to include lower_case_table_names = 2, I left it untouched.
Instead,
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