Thanks! That worked. I think I know what happened now. I did not manually preserve the my.ini file from the original installation, but there were some files left after the uninstall. Since I just renamed that directory and installed there, it probably left the old file.
Also,
# reduce mem size for MYISAM usage
table_definition_cache = 600
#5.5 to 5.6 changes
explicit_defaults_for_tim
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