I just upgraded wampserver to 2.0f today and ran into this same issue.
My phpmyadmin.conf file had the correct directory, so that wasn't the problem.
My config.inc.php in the PHPMyAdmin3.1.1 did not have the line with the allownorootpassword in it, so that wasn't the problem either.
I changed the directory for PHPMyAdmin in the phpmyadminconf to reference the old phpmyadmin for now and t
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